Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
GenBank Identifier |
Deinococcus deserti |
VCD115 |
Deinococcales |
2,819,842 |
|
[51] |
Chromosome NC_012526
Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528 |
Deinococcus geothermalis |
DSM 11300 |
Deinococcales |
2,467,205 |
2,335 |
DOE Joint Genome Institute |
Chromosome CP000359
Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856
|
Deinococcus gobiensis |
I-0 |
Deinococcales |
3,137,147 |
|
[52] |
Chromosome CP002191
Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197 |
Deinococcus maricopensis |
DSM 21211 |
Deinococcales |
3,498,530 |
|
US DOE Joint Genome Institute |
CP002454 |
Deinococcus proteolyticus |
MRP |
Deinococcales |
2,147,060 |
|
US DOE Joint Genome Institute |
Chromosome CP002536
Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540 |
Deinococcus radiodurans |
R1 |
Deinococcales |
Chromosome 1: 2,648,638
Chromosome 2: 412,348 |
Chromosome 1: 2,579
Chromosome 2: 357 |
[53] |
Chromosome 1 NC_001263
Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958 |
Marinithermus hydrothermalis |
DSM 14884 |
Thermales |
2,269,167 |
|
DOE Joint Genome Institute |
CP002630 |
Meiothermus ruber |
DSM 1279 |
Thermales |
3,097,457 |
|
DOE Joint Genome Institute |
CP001743 |
Meiothermus silvanus |
DSM 9946 |
Thermales |
3,249,394 |
|
[54] |
Chromosome CP002042
Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044 |
Oceanithermus profundus |
DSM 14977 |
Thermales |
2,303,940 |
|
DOE Joint Genome Institute |
Chromosome CP002361
Plasmid pOCEPR01 |
Thermus scotoductus |
SA-01 |
Thermales |
2,346,803 |
|
[55] |
Chromosome CP001962
Plasmid pTSC8 CP001963 |
Thermus species |
CCB_US3_UF1 |
Thermales |
2,243,772 |
|
Universiti Sains Malaysia |
Chromosome CP003126
Plasmid pTCCB09 CP003127 |
Thermus thermophilus |
HB27 |
Thermales |
1,894,877 |
1,982 |
[56] |
Chromosome AE017221
Plasmid pTT27 AE017222 |
Thermus thermophilus |
HB8 |
Thermales |
1,849,742 |
1,973 |
Nara Institute of Science and Technology |
Chromosome NC_006461
Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463 |
Thermus thermophilus |
JL-18 |
Thermales |
1,902,595 |
|
DOE Joint Genome Institute |
Chromosome CP003252
Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254 |
Thermus thermophilus |
SG0.5JP17-16 |
Thermales |
1,863,201 |
|
DOE Joint Genome Institute |
Chromosome CP002777
Plasmid pTHTHE1601 CP002778 |
Truepera radiovictrix |
DSM 17093 |
Deinococcales |
3,260,398 |
|
DOE Joint Genome Institute |
CP002049 |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Acidobacteria bacterium |
Ellin345 |
Acidobacteria |
5,650,368 |
4,777 |
Unpublished[1] |
Leifsonia xyli |
CTCB07 |
Acidobacteria |
2,584,158 |
2,030 |
[57] |
Propionibacterium acnes |
KPA171202 |
Acidobacteria |
2,560,265 |
2,297 |
[58] |
Rubrobacter xylanophilus |
DSM9941 |
Acidobacteria |
3,225,748 |
3,140 |
DOE Joint Genome Institute |
Tropheryma whippelii |
TW08/27 |
Acidobacteria |
925,938 |
784 |
[59] |
Tropheryma whippelii |
Twist |
Acidobacteria |
927,303 |
808 |
[60] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Bacillus anthracis |
Ames |
Bacilli |
5,227,293 |
5,311 |
[61] |
Bacillus anthracis |
Sterne |
Bacilli |
5,228,663 |
5,287 |
Unpublished[1] |
Bacillus cereus |
ATCC10987 |
Bacilli |
5,224,283 |
5,603 |
[62] |
Bacillus cereus |
ATCC14579 |
Bacilli |
5,411,809 |
5,234 |
[63] |
Bacillus cereus |
ZK |
Bacilli |
5,300,915 |
5,134 |
Unpublished[1] |
Bacillus clausii |
KSMK16 |
Bacilli |
4,303,871 |
4,108 |
[64] |
Bacillus halodurans |
C125 |
Bacilli |
4,202,352 |
4,066 |
[65] |
Bacillus licheniformis |
ATCC14580 |
Bacilli |
4,222,334 |
4,152 |
[66] |
Bacillus licheniformis |
Unspecified |
Bacilli |
4,222,645 |
4,196 |
[67] |
Bacillus licheniformis |
DSM13 |
Bacilli |
4,222,645 |
4,196 |
[67] |
Bacillus subtilis |
168 |
Bacilli |
4,214,630 |
4,106 |
[68] |
Bacillus thuringiensis |
9727 |
Bacilli |
5,237,682 |
5,117 |
[69] |
Carboxydothermus hydrogenoformans |
Z2901 |
Clostridia |
2,401,520 |
2,620 |
[70] |
Clostridium acetobutylicum |
ATCC824 |
Clostridia |
3,940,880 |
3,672 |
[71] |
Clostridium difficile |
QCD-32g58 |
Clostridia |
3,840,681 |
|
Unpublished[1] |
Clostridium perfringens |
13 |
Clostridia |
3,031,430 |
2,660 |
[72] |
Clostridium tetani |
E88 |
Clostridia |
2,799,251 |
2,373 |
[73] |
Desulfitobacterium hafniense |
Y51 |
Clostridia |
5,727,534 |
5,060 |
[74] |
Enterococcus faecalis |
V583 |
Bacilli |
3,218,031 |
3,113 |
[75] |
Geobacillus kaustophilus |
HTA426 |
Bacilli |
3,544,776 |
3,498 |
[76] |
Lactobacillus acetotolerans |
NCFM |
Bacilli |
|
|
|
Lactobacillus acidophilus |
NCFM |
Bacilli |
1,993,564 |
1,864 |
[77] |
Lactobacillus delbrueckii |
bulgaricus |
Bacilli |
1,864,998 |
2,096 |
Unpublished[1] |
Lactobacillus johnsonii |
NCC533 |
Bacilli |
1,992,676 |
1,821 |
[78] |
Lactobacillus plantarum |
WCFS1 |
Bacilli |
3,308,274 |
3,051 |
[78] |
Lactobacillus sakei |
23K |
Bacilli |
1,884,661 |
1,885 |
Unpublished[1] |
Lactobacillus sakei |
sakei23K |
Bacilli |
1,884,661 |
1,885 |
Unpublished[1] |
Lactobacillus salivarius |
UCC118 |
Bacilli |
1,827,111 |
1,717 |
Unpublished[1] |
Lactococcus lactis |
IL1403 |
Bacilli |
2,365,589 |
2,266 |
[79] |
Listeria innocua |
Clip11262 |
Bacilli |
3,011,208 |
2,981 |
[80] |
Listeria monocytogenes |
EGD |
Bacilli |
2,944,528 |
2,855 |
[80] |
Listeria monocytogenes |
4b |
Bacilli |
2,905,187 |
2,821 |
[81] |
Moorella thermoacetica |
ATCC39073 |
Clostridia |
2,628,784 |
2,465 |
Unpublished[1] |
Oceanobacillus iheyensis |
HTE831 |
Bacilli |
3,630,528 |
3,496 |
[82] |
Staphylococcus aureus |
COL |
Bacilli |
2,809,422 |
2,673 |
[83] |
Staphylococcus aureus |
MRSA252 |
Bacilli |
2,902,619 |
2,744 |
[84] |
Staphylococcus aureus |
MSSA476 |
Bacilli |
2,799,802 |
2,619 |
[84] |
Staphylococcus aureus |
Mu50 |
Bacilli |
2,878,529 |
2,699 |
[85] |
Staphylococcus aureus |
MW2 |
Bacilli |
2,820,462 |
2,632 |
[86] |
Staphylococcus aureus |
N315 |
Bacilli |
2,814,816 |
2,593 |
[85] |
Staphylococcus aureus |
NCTC8325 |
Bacilli |
2,821,361 |
2,892 |
Unpublished[1] |
Staphylococcus aureus |
RF122 |
Bacilli |
2,742,531 |
2,589 |
Unpublished[1] |
Staphylococcus aureus |
USA300 |
Bacilli |
2,872,769 |
2,560 |
[87] |
Staphylococcus epidermidis |
ATCC12228 |
Bacilli |
2,499,279 |
2,419 |
Unpublished[1] |
Staphylococcus epidermidis |
RP62A |
Bacilli |
2,616,530 |
2,494 |
[83] |
Staphylococcus haemolyticus |
JCSC1435 |
Bacilli |
2,685,015 |
2,678 |
[88] |
Staphylococcus saprophyticus |
saprophyticus |
Bacilli |
2,516,575 |
2,446 |
[89] |
Streptococcus agalactiae |
A909 |
Bacilli |
2,127,839 |
1,996 |
[90] |
Streptococcus agalactiae |
NEM316 |
Bacilli |
2,211,485 |
2,134 |
[91] |
Streptococcus agalactiae |
2603 V/R |
Bacilli |
2,160,267 |
2,124 |
[92] |
Streptococcus mutans |
UAB159 |
Bacilli |
2,030,921 |
1,960 |
[93] |
Streptococcus pneumoniae |
R6 |
Bacilli |
2,038,615 |
2,043 |
[94] |
Streptococcus pneumoniae |
TIGR4 |
Bacilli |
2,160,842 |
2,125 |
[95] |
Streptococcus pyogenes |
M5Manfredo |
Bacilli |
1,841,271 |
|
Unpublished[1] |
Streptococcus pyogenes |
MGAS10270 |
Bacilli |
1,928,252 |
1,987 |
[96] |
Streptococcus pyogenes |
MGAS10394 |
Bacilli |
1,899,877 |
1,886 |
[97] |
Streptococcus pyogenes |
MGAS10750 |
Bacilli |
1,937,111 |
1,979 |
[96] |
Streptococcus pyogenes |
MGAS2096 |
Bacilli |
1,860,355 |
1,898 |
[96] |
Streptococcus pyogenes |
MGAS315 |
Bacilli |
1,900,521 |
1,865 |
[98] |
Streptococcus pyogenes |
MGAS5005 |
Bacilli |
1,838,554 |
1,865 |
[99] |
Streptococcus pyogenes |
MGAS6180 |
Bacilli |
1,897,573 |
1,894 |
[100] |
Streptococcus pyogenes |
MGAS8232 |
Bacilli |
1,895,017 |
1,845 |
[101] |
Streptococcus pyogenes |
MGAS9429 |
Bacilli |
1,836,467 |
1,877 |
[96] |
Streptococcus pyogenes |
SF370 |
Bacilli |
1,852,441 |
1,696 |
[102] |
Streptococcus pyogenes |
SSI1 |
Bacilli |
1,894,275 |
1,861 |
[103] |
Streptococcus thermophilus |
CNRZ1066 |
Bacilli |
1,796,226 |
1,915 |
[104] |
Streptococcus thermophilus |
LMG18311 |
Bacilli |
1,796,846 |
1,889 |
[104] |
Thermoanaerobacter tengcongensis |
MB4T |
Clostridia |
2,689,445 |
2,588 |
Unpublished[1] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Rhodopirellula baltica |
strain1 |
Planctomycetes Planctomycetacia |
7,145,576 |
7,325 |
Unpublished[1] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Agrobacterium tumefaciens |
C58 |
Alphaproteobacteria |
2,841,581 |
2,722 |
[106] |
Anaplasma marginale |
StMaries |
Alphaproteobacteria |
1,197,687 |
949 |
[107] |
Anaplasma phagocytophilum |
HZ |
Alphaproteobacteria |
1,471,282 |
1,264 |
[108] |
Bartonella henselae |
Houston-1 |
Alphaproteobacteria |
1,931,047 |
1,612 |
[109] |
Bartonella quintana |
Toulouse |
Alphaproteobacteria |
1,581,384 |
1,308 |
[109] |
Bradyrhizobium japonicum |
USDA110 |
Alphaproteobacteria |
9,105,828 |
8,317 |
[110] |
Brucella abortus |
2308 (chromosome I) |
Alphaproteobacteria |
1,156,948 |
1,164 |
[111] |
|
2308 (chromosome II) |
Alphaproteobacteria |
2,121,359 |
2,186 |
[111] |
Brucella abortus |
9-941 (chromosome I) |
Alphaproteobacteria |
2,124,241 |
2,030 |
[112] |
|
9-941 (chromosome II) |
Alphaproteobacteria |
1,162,204 |
1,055 |
[112] |
Brucella melitensis |
16M (chromosome I) |
Alphaproteobacteria |
2,117,144 |
2,059 |
[113] |
|
16M (chromosome II) |
Alphaproteobacteria |
1,177,787 |
1,139 |
[113] |
Brucella suis |
1330 (chromosome I) |
Alphaproteobacteria |
2,107,794 |
2,123 |
[114] |
|
1330 (chromosome II) |
Alphaproteobacteria |
1,207,381 |
1,150 |
[114] |
Caulobacter crescentus |
CB15 |
Alphaproteobacteria |
4,016,947 |
3,737 |
[115] |
Ehrlichia canis |
Jake |
Alphaproteobacteria |
1,315,030 |
925 |
Unpublished[1] |
Ehrlichia chaffeensis |
Arkansas |
Alphaproteobacteria |
1,176,248 |
1,105 |
[108] |
Ehrlichia ruminantium |
Gardel |
Alphaproteobacteria |
1,499,920 |
950 |
Unpublished[1] |
Ehrlichia ruminantium |
Welgevonden |
Alphaproteobacteria |
1,512,977 |
958 |
Unpublished[1] |
Unspecified |
Unspecified |
Alphaproteobacteria |
1,516,355 |
920 |
[116] |
Erythrobacter litoralis |
HTCC2594 |
Alphaproteobacteria |
3,052,398 |
3,011 |
Unpublished[1] |
Gluconobacter oxydans |
621H |
Alphaproteobacteria |
2,702,173 |
2,432 |
[117] |
Jannaschia species |
CCS1 |
Alphaproteobacteria |
4,317,977 |
4,212 |
Unpublished[1] |
Magnetospirillum magneticum |
AMB1 |
Alphaproteobacteria |
4,967,148 |
4,559 |
[118] |
Mesorhizobium loti |
MAFF303099 |
Alphaproteobacteria |
7,036,071 |
6,752 |
[119] |
Neorickettsia sennetsu |
Miyayama |
Alphaproteobacteria |
859,006 |
932 |
[108] |
Nitrobacter hamburgensis |
X14 |
Alphaproteobacteria |
4,406,967 |
3,804 |
Unpublished[1] |
Nitrobacter winogradskyi |
Nb255 |
Alphaproteobacteria |
3,402,093 |
3,122 |
Unpublished[1] |
Novosphingobium aromaticivorans |
DSM12444 |
Alphaproteobacteria |
3,561,584 |
3,324 |
Unpublished[1] |
Pelagibacter ubique |
HTCC1062 |
Alphaproteobacteria |
1,308,759 |
1,354 |
[120] |
Rhizobium etli |
CFN42 |
Alphaproteobacteria |
4,381,608 |
4,067 |
[121] |
Rhizobium leguminosarum |
viciae3841 |
Alphaproteobacteria |
7,751,309 |
4,746 |
Unpublished[1] |
Rhodobacter sphaeroides |
2.4.1 |
Alphaproteobacteria |
3,188,609 |
3,022 |
Unpublished[1] |
Unspecified |
Unspecified |
Alphaproteobacteria |
943,016 |
835 |
Unpublished[1] |
Rhodopseudomonas palustris |
BisB18 |
Alphaproteobacteria |
5,513,844 |
4,886 |
Unpublished[1] |
Rhodopseudomonas palustris |
BisB5 |
Alphaproteobacteria |
4,892,717 |
4,397 |
Unpublished[1] |
Rhodopseudomonas palustris |
CGA009 |
Alphaproteobacteria |
5,459,213 |
4,833 |
[122] |
Rhodopseudomonas palustris |
HaA2 |
Alphaproteobacteria |
5,331,656 |
4,683 |
Unpublished[1] |
Rhodospirillum rubrum |
ATCC11170 |
Alphaproteobacteria |
4,352,825 |
3,791 |
Unpublished[1] |
Rickettsia bellii |
RML369-C |
Alphaproteobacteria |
1,522,076 |
1,429 |
Unpublished[1] |
Rickettsia conorii |
Malish7 |
Alphaproteobacteria |
1,268,755 |
1,374 |
[123] |
Rickettsia felis |
URRWXCal2 |
Alphaproteobacteria |
1,485,148 |
1,400 |
[124] |
Rickettsia prowazekii |
Madrid-E |
Alphaproteobacteria |
1,111,523 |
834 |
[125] |
Rickettsia typhi |
Wilmington |
Alphaproteobacteria |
1,111,496 |
838 |
[126] |
Silicibacter pomeroyi |
DSS3 |
Alphaproteobacteria |
4,109,442 |
3,810 |
[127] |
Silicibacter species |
TM1040 |
Alphaproteobacteria |
3,200,938 |
3,030 |
Unpublished[1] |
Sinorhizobium medicae |
WSM419 |
Alphaproteobacteria |
3,781,904 |
3,635 |
[128] |
Sinorhizobium meliloti |
Rm1021 |
Alphaproteobacteria |
3,654,135 |
3,341 |
[129] |
Sphingopyxis alaskensis |
RB2256 |
Alphaproteobacteria |
3,345,170 |
3,165 |
Unpublished[1] |
Wolbachia endosymbiont |
TRS |
Alphaproteobacteria |
1,080,084 |
805 |
[130] |
Wolbachia pipientis |
wMel |
Alphaproteobacteria |
1,267,782 |
1,195 |
[131] |
Zymomonas mobilis |
ZM4 |
Alphaproteobacteria |
2,056,416 |
1,998 |
[132] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Azoarcus sp. |
EbN1 |
Betaproteobacteria |
4,296,230 |
4,128 |
2002[133] |
Bordetella bronchiseptica |
RB50 |
Betaproteobacteria |
5,339,179 |
5,006 |
Unpublished[1] |
Bordetella parapertussis |
12822 |
Betaproteobacteria |
4,773,551 |
4,402 |
Unpublished[1] |
Bordetella pertussis |
TohamaI |
Betaproteobacteria |
4,086,189 |
3,806 |
Unpublished[1] |
Burkholderia cenocepacia |
AU1054 |
Betaproteobacteria |
3,294,563 |
2,965 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,788,459 |
2,472 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
1,196,094 |
1,040 |
Unpublished[1] |
Burkholderia mallei |
ATCC23344 |
Betaproteobacteria |
3,510,148 |
2,996 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,325,379 |
2,029 |
2004[134] |
Burkholderia pseudomallei |
1710b |
Betaproteobacteria |
4,126,292 |
3,736 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
3,181,762 |
2,611 |
Unpublished[1] |
Burkholderia pseudomallei |
K96243 |
Betaproteobacteria |
4,074,542 (chromosome I) 3,173,005 (chromosome II) |
3,460 (chromosome I) 2,395 (chromosome II) |
2004[84] |
Burkholderia species |
383 |
Betaproteobacteria |
3,694,126 |
3,334 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
3,587,082 |
3,174 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
1,395,069 |
1,209 |
Unpublished[1] |
Burkholderia thailandensis |
E264 |
Betaproteobacteria |
3,809,201 |
3,276 |
2005[135] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,914,771 |
2,358 |
2005[135] |
Burkholderia xenovorans |
LB400 |
Betaproteobacteria |
4,895,836 |
4,430 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
3,363,523 |
2,960 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
1,471,779 |
1,312 |
Unpublished[1] |
Chromobacterium violaceum |
ATCC12472 |
Betaproteobacteria |
4,751,080 |
4,407 |
2003[136] |
Dechloromonas aromatica |
RCB |
Betaproteobacteria |
4,501,104 |
4,171 |
Unpublished[1] |
Methylobacillus flagellatus |
KT |
Betaproteobacteria |
2,971,517 |
2,753 |
Unpublished[1] |
Neisseria gonorrhoeae |
FA1090 |
Betaproteobacteria |
2,153,922 |
2,002 |
Unpublished[1] |
Neisseria meningitidis |
serogroup A strain Z2491 |
Betaproteobacteria |
2,184,406 |
2,121 |
2000[137] |
Neisseria meningitidis |
serogroup B strain MC58 |
Betaproteobacteria |
2,272,360 |
2,063 |
2000[138] |
Nitrosomonas europaea |
Schmidt |
Betaproteobacteria |
2,812,094 |
2,574 |
2003[139] |
Nitrosospira multiformis |
ATCC25196 |
Betaproteobacteria |
3,184,243 |
2,757 |
Unpublished[1] |
Polaromonas species |
JS666 |
Betaproteobacteria |
5,200,264 |
4,817 |
Unpublished[1] |
Ralstonia eutropha |
JMP134 |
Betaproteobacteria |
3,806,533 |
3,439 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,726,152 |
2,407 |
Unpublished[1] |
Ralstonia metallidurans |
CH34 |
Betaproteobacteria |
3,928,089 |
3,601 |
Unpublished[1] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,580,084 |
2,313 |
Unpublished[1] |
Ralstonia solanacearum |
GMI1000 |
Betaproteobacteria |
3,716,413 |
3,441 |
2002[140] |
Unspecified |
Unspecified |
Betaproteobacteria |
2,094,509 |
1,679 |
[140] |
Rhodoferax ferrireducens |
DSM15236 |
Betaproteobacteria |
4,712,337 |
4,170 |
Unpublished[1] |
Thiobacillus denitrificans |
ATCC25259 |
Betaproteobacteria |
2,909,809 |
2,827 |
Unpublished[1] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Acinetobacter sp. |
ADP1 |
Gammaproteobacteria |
3,598,621 |
3,325 |
2004[141] |
Baumannia cicadellinicola |
Hc |
Gammaproteobacteria |
686,194 |
595 |
Unpublished[1] |
Blochmannia floridanus |
Strain |
Gammaproteobacteria |
705,557 |
589 |
2003[142] |
Blochmannia pennsylvanicus |
bpEN |
Gammaproteobacteria |
791,654 |
610 |
2005[143] |
Buchnera aphidicola |
APS |
Gammaproteobacteria |
640,681 |
564 |
2000[144] |
Buchnera aphidicola |
B |
Gammaproteobacteria |
615,980 |
504 |
2003[145] |
Buchnera aphidicola |
Sg |
Gammaproteobacteria |
641,454 |
545 |
2002[146] |
Carsonella ruddii |
PV |
Gammaproteobacteria |
159,662 |
182 |
2006[147] |
Chromohalobacter salexigens |
DSM3043 |
Gammaproteobacteria |
3,696,649 |
3,298 |
Unpublished[1] |
Colwellia psychrerythraea |
34H |
Gammaproteobacteria |
5,373,180 |
4,910 |
Unpublished[1] |
Coxiella burnetii |
RSA493 |
Gammaproteobacteria |
1,995,281 |
2,016 |
2003[148] |
Erwinia carotovora |
SCRI1043 |
Gammaproteobacteria |
5,064,019 |
4,492 |
Unpublished[1] |
Escherichia coli |
536 |
Gammaproteobacteria |
4,938,920 |
4,685 |
Unpublished[1] |
Escherichia coli |
CFT073 |
Gammaproteobacteria |
5,231,428 |
5,379 |
2002[149] |
Escherichia coli |
K-12 |
Gammaproteobacteria |
4,639,675 (4,646,332) |
4,331 (4,337) |
1997,[150] 2005[151] |
Escherichia coli |
O157:H7 |
Gammaproteobacteria |
5,528,445 (5,498,450) |
5,349 (5,361) |
2001,[152] 1999[153] |
Escherichia coli |
UTI89 |
Gammaproteobacteria |
5,065,741 |
5,066 |
Unpublished[1] |
Francisella tularensis |
LVS |
Gammaproteobacteria |
1,895,994 |
1,967 |
Unpublished[1] |
Francisella tularensis |
SCHUS4 |
Gammaproteobacteria |
1,892,819 |
1,804 |
2005[154] |
Haemophilus ducreyi |
3500HP |
Gammaproteobacteria |
1,698,955 |
1,717 |
Unpublished[1] |
Haemophilus influenzae |
86-028NP |
Gammaproteobacteria |
1,913,428 |
1,792 |
2005[155] |
Haemophilus influenzae |
Rd |
Gammaproteobacteria |
1,830,138 |
1,709 |
1995[156] |
Hahella chejuensis |
KCTC2396 |
Gammaproteobacteria |
7,215,267 |
6,782 |
2005[157] |
Idiomarina loihiensis |
L2TR |
Gammaproteobacteria |
2,839,318 |
2,628 |
2004[158] |
Legionella pneumophila |
Lens |
Gammaproteobacteria |
3,345,687 |
2,947 |
2004[159] |
Legionella pneumophila |
Paris |
Gammaproteobacteria |
3,503,610 |
3,082 |
2004[159] |
Legionella pneumophila |
Philadelphia1 |
Gammaproteobacteria |
3,397,754 |
2,942 |
Unpublished[1] |
Mannheimia succiniciproducens |
MBEL55E |
Gammaproteobacteria |
2,314,078 |
2,384 |
Unpublished[1] |
Methylococcus capsulatus |
Bath |
Gammaproteobacteria |
3,304,561 |
2,960 |
2004[160] |
Nitrosococcus oceani |
ATCC19707 |
Gammaproteobacteria |
3,481,691 |
2,976 |
Unpublished[1] |
Pasteurella multocida |
Pm70 |
Gammaproteobacteria |
2,257,487 |
2,014 |
2001[161] |
Photobacterium profundum |
SS9 |
Gammaproteobacteria |
4,085,304 |
3,416 |
Unpublished[1] |
Unspecified |
Unspecified |
Gammaproteobacteria |
2,237,943 |
1,997 |
Unpublished[1] |
Photorhabdus luminescens |
laumondiiTTO1 |
Gammaproteobacteria |
5,688,987 |
4,905 |
Unpublished[1] |
Pseudoalteromonas haloplanktis |
TAC125 |
Gammaproteobacteria |
3,214,944 |
2,941 |
2005[162] |
Unspecified |
Unspecified |
Gammaproteobacteria |
635,328 |
546 |
[162] |
Pseudomonas aeruginosa |
VRFPA04 |
Gammaproteobacteria |
6,818,030 |
5,939 |
2016[163] |
Pseudomonas entomophila |
L48 |
Gammaproteobacteria |
5,888,780 |
5,168 |
Unpublished[1] |
Pseudomonas fluorescens |
Pf-5 |
Gammaproteobacteria |
7,074,893 |
6,137 |
2005[164] |
Pseudomonas fluorescens |
PfO-1 |
Gammaproteobacteria |
6,438,405 |
5,736 |
Unpublished[1] |
Pseudomonas putida |
KT2440 |
Gammaproteobacteria |
6,181,863 |
5,350 |
2002[165] |
Pseudomonas syringae |
B728a |
Gammaproteobacteria |
6,093,698 |
5,136 |
2005[166] |
Pseudomonas syringae |
DC3000 |
Gammaproteobacteria |
6,397,126 |
5,470 |
2003[167] |
Pseudomonas syringae |
phaseolicola1448A |
Gammaproteobacteria |
5,928,787 |
4,983 |
Unpublished[1] |
Psychrobacter arcticum |
273-4 |
Gammaproteobacteria |
2,650,701 |
2,147 |
Unpublished[1] |
Psychrobacter cryohalolentis |
K5 |
Gammaproteobacteria |
~3.1Mb |
2,575 |
[168] |
Unspecified |
Unspecified |
Gammaproteobacteria |
3,059,876 |
2,467 |
Unpublished[1] |
Saccharophagus degradans |
Feb-40 |
Gammaproteobacteria |
5,057,531 |
4,008 |
Unpublished[1] |
Salmonella enterica |
ATCC9150 |
Gammaproteobacteria |
4,585,229 |
4,093 |
2004[169] |
Salmonella enterica |
SCB67 |
Gammaproteobacteria |
4,755,700 |
4,445 |
2005[170] |
Salmonella enterica |
Ty2 |
Gammaproteobacteria |
4,791,961 |
4,323 |
2003[171] |
Salmonella enterica |
typhiCT18 |
Gammaproteobacteria |
4,809,037 |
4,600 |
2001[172] |
Salmonella typhimurium |
LT2 |
Gammaproteobacteria |
4,857,432 |
4,452 |
2001[173] |
Shewanella denitrificans |
OS217 |
Gammaproteobacteria |
4,545,906 |
3,754 |
Unpublished[1] |
Shewanella oneidensis |
MR1 |
Gammaproteobacteria |
4,969,803 |
4,630 |
2002[174] |
Shigella boydii |
Sb227 |
Gammaproteobacteria |
4,519,823 |
4,142 |
2005[175] |
Shigella dysenteriae |
Sd197 |
Gammaproteobacteria |
4,369,232 |
4,277 |
2005[175] |
Shigella flexneri |
2457T |
Gammaproteobacteria |
4,599,354 |
4,073 |
2003[176] |
Shigella flexneri |
2a301 |
Gammaproteobacteria |
4,607,203 |
4,436 |
2002[177] |
Shigella sonnei |
Ss046 |
Gammaproteobacteria |
4,825,265 |
4,224 |
2005[175] |
Sodalis glossinidius |
morsitans |
Gammaproteobacteria |
4,171,146 |
2,432 |
2006[178] |
Thiomicrospira crunogena |
XCL2 |
Gammaproteobacteria |
2,427,734 |
2,192 |
Unpublished[1] |
Vibrio cholerae |
N16961 |
Gammaproteobacteria |
2,961,149 (chromosome I) 1,072,315 (chromosome II) |
2,736 (chromosome I) 1,092 (chromosome II) |
2000[179] |
Vibrio fischeri |
ES114 |
Gammaproteobacteria |
2,906,179 (chromosome I) 1,332,022 (chromosome II) |
2,575 (chromosome I) 1,172 (chromosome II) |
2005[180] |
Vibrio parahaemolyticus |
RIMD2210633 |
Gammaproteobacteria |
3,288,558 (chromosome I) 1,877,212 (chromosome II) |
3,080 (chromosome I) 1,752 (chromosome II) |
2000[181] |
Vibrio vulnificus |
CMCP6 |
Gammaproteobacteria |
3,281,944 (chromosome I) 1,844,853 (chromosome II) |
2,973 (chromosome I) 1,565 (chromosome II) |
2003[182] |
Vibrio vulnificus |
YJ016 |
Gammaproteobacteria |
3,354,505 (chromosome I) 1,857,073 (chromosome II) |
3,262 (chromosome I) 1,697 (chromosome II) |
2003[183] |
Wigglesworthia glossinidia |
Strain |
Gammaproteobacteria |
697,724 |
611 |
2002[184] |
Xanthomonas axonopodis |
citri306 |
Gammaproteobacteria |
5,175,554 |
4,312 |
2002[185] |
Xanthomonas campestris |
8004 |
Gammaproteobacteria |
5,148,708 |
4,273 |
2005[186] |
Xanthomonas campestris |
8510 |
Gammaproteobacteria |
5,178,466 |
4,487 |
2005[187] |
Xanthomonas campestris |
ATCC33913 |
Gammaproteobacteria |
5,076,188 |
4,181 |
2002[185] |
Xanthomonas oryzae |
KACC10331 |
Gammaproteobacteria |
4,941,439 |
4,637 |
2005[188] |
Xanthomonas oryzae |
MAFF311018 |
Gammaproteobacteria |
4,940,217 |
4,372 |
Unpublished[1] |
Xylella fastidiosa |
9a5c |
Gammaproteobacteria |
2,679,306 |
2,766 |
2000[189] |
Xylella fastidiosa |
Temecula1 |
Gammaproteobacteria |
2,519,802 |
2,034 |
2003[190] |
Yersinia pestis |
Antiqua |
Gammaproteobacteria |
4,702,289 |
4,167 |
2006[191] |
Yersinia pestis |
CO-92BiovarOrientalis |
Gammaproteobacteria |
4,653,728 |
4,008 |
2001[192] |
Yersinia pestis |
KIM |
Gammaproteobacteria |
4,600,755 |
4,090 |
2002[193] |
Yersinia pestis |
Mediaevalis |
Gammaproteobacteria |
4,595,065 |
3,895 |
2004[194] |
Yersinia pseudotuberculosis |
IP32953 |
Gammaproteobacteria |
4,744,671 |
3,974 |
2004[195] |
Delta/epsilon subdivisions
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Anaeromyxobacter dehalogenans |
2CP-C |
delta-epsilon |
5,013,479 |
4,346 |
Unpublished[1] |
Bdellovibrio bacteriovorus |
HD100 |
delta-epsilon |
3,782,950 |
3,583 |
2004[196] |
Campylobacter jejuni |
NCTC11168 |
delta-epsilon |
1,641,481 |
1,643 |
2000[197] |
Campylobacter jejuni |
RM1221 |
delta-epsilon |
1,777,831 |
1,838 |
2005[198] |
Desulfotalea psychrophila |
LSv54 |
delta-epsilon |
3,523,383 |
3,118 |
Unpublished[1] |
Desulfovibrio desulfuricans |
G20 |
delta-epsilon |
3,730,232 |
3,775 |
Unpublished[1] |
Desulfovibrio vulgaris |
Hildenborough |
delta-epsilon |
3,570,858 |
3,379 |
2004[199] |
Geobacter metallireducens |
GS15 |
delta-epsilon |
3,997,420 |
3,519 |
Unpublished[1] |
Geobacter sulfurreducens |
PCA |
delta-epsilon |
3,814,139 |
3,447 |
2003[200] |
Helicobacter hepaticus |
ATCC51449 |
delta-epsilon |
1,799,146 |
1,875 |
2003[201] |
Helicobacter pylori |
26695 |
delta-epsilon |
1,667,867 |
1,566 |
1997[202] |
Helicobacter pylori |
HPAG1 |
delta-epsilon |
1,596,366 |
1,536 |
Unpublished[1] |
Helicobacter pylori |
J99 |
delta-epsilon |
1,643,831 |
1,491 |
1999[203] |
Lawsonia intracellularis |
PHEMN1-00 |
delta-epsilon |
1,719,014 |
1,344 |
Unpublished[1] |
Lawsonia intracellularis |
PHE/MN1-00 |
delta-epsilon |
1,457,619 (chromosome) 27,048 (plasmid A) 39,794 (plasmid B) 194,553 (plasmid C) |
1,187 29 (plasmid A) 24 (plasmid B) 104 (plasmid C) |
2013[204] |
Myxococcus xanthus |
DK1622 |
delta-epsilon |
9,139,763 |
7,331 |
Unpublished[1] |
Pelobacter carbinolicus |
DSM2380 |
delta-epsilon |
3,665,893 |
3,119 |
Unpublished[1] |
Sorangium cellulosum |
So ce56 |
delta-epsilon |
13,033,779 |
9,367 |
2007[205] |
Sulfurimonas denitrificans |
DSM1251 |
delta-epsilon |
2,201,561 |
2,104 |
2007[206] |
Syntrophus aciditrophicus |
SB |
delta-epsilon |
3,179,300 |
3,168 |
Unpublished[1] |
Thiomicrospira denitrificans |
ATCC33889 |
delta-epsilon |
2,201,561 |
2,097 |
Unpublished[1] |
Wolinella succino |
DSMZ1740 |
delta-epsilon |
2,110,355 |
2,044 |
2003[207] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Borrelia burgdorferi |
B31 |
Spirochaetes |
910,724 |
850 |
[208] |
Borrelia garinii |
PBi |
Spirochaetes |
904,246 |
832 |
[209] |
Leptospira interrogans |
56601 |
Spirochaetes |
4,332,241 |
4,358 |
[210] |
Unspecified |
Unspecified |
Spirochaetes |
358,943 |
367 |
[210] |
Leptospira interrogans |
FiocruzL1130 |
Spirochaetes |
4,277,185 |
3,394 |
[211] |
Unspecified |
Unspecified |
Spirochaetes |
350,181 |
264 |
[211] |
Treponema denticola |
ATCC35405 |
Spirochaetes |
2,843,201 |
2,767 |
[212] |
Treponema pallidum |
Nichols |
Spirochaetes |
1,138,011 |
1,031 |
[213] |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
GeneBank Identifier |
Thermovirga lienii |
Cas60314, DSM 17291 |
Synergistia |
1,967,774 |
|
DOE Joint Genome Institute |
CP003096 |
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
GeneBank Identifier |
Mesoplasma florum |
L1 |
Mollicutes |
793,224 |
683 |
Unpublished[1] |
Mycoplasma anatis |
1340, ATCC 25524 |
Mollicutes |
|
|
[214] |
AFVJ00000000 |
Mycoplasma capricolum |
ATCC273 |
Mollicutes |
1,010,023 |
812 |
Unpublished[1] |
|
Mycoplasma gallisepticum |
R |
Mollicutes |
996,422 |
726 |
[215] |
|
Mycoplasma genitalium |
G37 |
Mollicutes |
580,076 |
476 |
[216] |
|
Mycoplasma haemocanis |
Illinois |
Mollicutes |
919,992 |
|
Unpublished |
CP003199 |
Mycoplasma hyopneumoniae |
232 |
Mollicutes |
892,758 |
691 |
[217] |
|
Mycoplasma hyopneumoniae |
7448 |
Mollicutes |
920,079 |
663 |
[218] |
|
Mycoplasma hyopneumoniae |
J |
Mollicutes |
897,405 |
665 |
[218] |
|
Mycoplasma hyorhinis |
GDL-1 |
Mollicutes |
837,480 |
|
Unpublished |
CP003231 |
Mycoplasma leachii |
99/014/6 |
Mollicutes |
1,017,232 |
|
Unpublished |
FR668087 |
Mycoplasma mobile |
163K |
Mollicutes |
777,079 |
635 |
[219] |
|
Mycoplasma mycoides |
SC |
Mollicutes |
1,211,703 |
1,016 |
[220] |
|
Mycoplasma penetrans |
HF2 |
Mollicutes |
1,358,633 |
1,037 |
[221] |
|
Mycoplasma pneumoniae |
M129 |
Mollicutes |
816,394 |
688 |
[222] |
|
Mycoplasma pulmonis |
UAB |
Mollicutes |
963,879 |
782 |
[223] |
|
Mycoplasma synoviae |
53 |
Mollicutes |
799,476 |
672 |
[218] |
|
Phytoplas maasteris |
AYWB |
Mollicutes |
706,569 |
671 |
Unpublished[1] |
|
Phytoplas maasteris |
OY |
Mollicutes |
860,631 |
754 |
[224] |
|
Ureaplasma urealyticum |
serovar3 |
Mollicutes |
751,719 |
611 |
[225] |
|
Species |
Strain |
Type |
Base Pairs |
Genes |
Reference |
Fervidobacterium nodosum |
Rt17-B1 |
Thermotogae |
1,950,000 |
1,750 |
2009[228] |
Kosmotoga olearia |
TBF 19.5.1 |
Thermotogae |
2,302,126 |
2,118 |
2011[229] |
Mesotoga prima |
MesG1.Ag.4.2 |
Thermotogae |
2,974,229 chromosome 1,724 plasmid |
2,736 |
2012[230] |
Thermosipho africanus |
TCF52B |
Thermotogae |
2,016,657 |
2,000 |
2009[231] |
Thermosipho melanesiensis |
BI429 |
Thermotogae |
1,920,000 |
1,879 |
2009[228] |
Thermotoga lettingae |
TMO |
Thermotogae |
2,140,000 |
2,040 |
2009[228] |
Thermotoga maritima |
MSB8 |
Thermotogae |
1,860,725 |
1,846 |
1999,[232] 2013[233] |
Thermotoga petrophila |
RKU-1 |
Thermotogae |
1,820,000 |
1,785 |
2009[228] |
See also
References
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- ↑ Schell MA, et al. (2002). "The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract". Proc. Natl. Acad. Sci. U.S.A. 99 (22): 14422–7. doi:10.1073/pnas.212527599. PMC 137899. PMID 12381787.
- ↑ Cerdeño-Tárraga AM, et al. (2003). "The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129". Nucleic Acids Res. 31 (22): 6516–23. doi:10.1093/nar/gkg874. PMC 275568. PMID 14602910.
- ↑ Nishio Y, et al. (2003). "Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens". Genome Res. 13 (7): 1572–9. doi:10.1101/gr.1285603. PMC 403753. PMID 12840036.
- ↑ Tauch A, et al. (2005). "Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora". J Bacteriol. 187 (13): 4671–82. doi:10.1128/JB.187.13.4671-4682.2005. PMC 1151758. PMID 15968079.
- ↑ Li L, et al. (2005). "The complete genome sequence of Mycobacterium avium subspecies paratuberculosis". Proc. Natl. Acad. Sci. U.S.A. 102 (35): 12344–9. doi:10.1073/pnas.0505662102. PMC 1194940. PMID 16116077.
- ↑ Garnier T, et al. (2003). "The complete genome sequence of Mycobacterium bovis". Proc. Natl. Acad. Sci. U.S.A. 100 (13): 7877–82. doi:10.1073/pnas.1130426100. PMC 164681. PMID 12788972.
- ↑ Cole ST, et al. (2001). "Massive gene decay in the leprosy bacillus". Nature. 409 (6823): 1007–11. doi:10.1038/35059006. PMID 11234002.
- ↑ Cole ST, et al. (1998). "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence". Nature. 393 (6685): 537–44. doi:10.1038/31159. PMID 9634230.
- ↑ Ishikawa J, et al. (2004). "The complete genomic sequence of Nocardia farcinica IFM 10152". Proc. Natl. Acad. Sci. U.S.A. 101 (41): 14925–30. doi:10.1073/pnas.0406410101. PMC 522048. PMID 15466710.
- ↑ Omura S, et al. (2001). "Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites". Proc. Natl. Acad. Sci. U.S.A. 98 (21): 12215–20. doi:10.1073/pnas.211433198. PMC 59794. PMID 11572948.
- ↑ Redenbach M, et al. (1996). "A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome". Mol Microbiol. 21 (1): 77–96. doi:10.1046/j.1365-2958.1996.6191336.x. PMID 8843436.
- ↑ Ueda K, et al. (2004). "Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism". Nucleic Acids Res. 32 (16): 4937–44. doi:10.1093/nar/gkh830. PMC 519118. PMID 15383646.
- ↑ Deckert G, et al. (1998). "The complete genome of the hyperthermophilic bacterium Aquifex aeolicus". Nature. 392 (6674): 353–8. doi:10.1038/32831. PMID 9537320.
- ↑ Cerdeño-Tárraga AM, et al. (2005). "Extensive DNA inversions in the B. fragilis genome control variable gene expression". Science. 307 (5714): 1463–5. doi:10.1126/science.1107008. PMID 15746427.
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