Directed differentiation

Directed differentiation is a bioengineering methodology at the interface of stem cell biology, developmental biology and tissue engineering.[1] It is essentially harnessing the potential of stem cells by constraining their differentiation in vitro toward a specific cell type or tissue of interest.[2] Stem cells are by definition pluripotent, able to differentiate into several cell types such as neurons,[3] cardiomyocytes, hepatocytes, etc. Efficient directed differentiation requires a detailed understanding of the lineage and cell fate decision, often provided by developmental biology.[2][4]

Conceptual frame

During differentiation, pluripotent cells make a number of developmental decisions to generate first the three germ layers (ectoderm, mesoderm and endoderm) of the embryo and intermediate progenitors,[5] followed by subsequent decisions or check points, giving rise to all the body's mature tissues.[4] The differentiation process can be modeled as sequence of binary decisions based on probabilistic or stochastic models. Developmental biology and embryology provides the basic knowledge of the cell types' differentiation through mutation analysis, lineage tracing, embryo micro-manipulation and gene expression studies. Cell differentiation and tissue organogenesis involve a limited set of developmental signaling pathways.[4] It is thus possible to direct cell fate by controlling cell decisions through extracellular signaling, mimicking developmental signals.

Source material

Directed differentiation is primarily applied to pluripotent stem cells (PSCs) of mammalian origin, in particular mouse and human cells for biomedical research applications.[5] Since the discovery of embryonic stem (ES) cells (1981) and induced pluripotent stem (iPS) cells (2006), source material is potentially unlimited.[1][4][6] Historically, embryonic carcinoma (EC) cells have also been used.[7] Fibroblasts or other differentiated cell types have been used for direct reprogramming strategies.[1]

Methods

Cell differentiation involves a transition from a proliferative mode toward differentiation mode. Directed differentiation consists in mimicking developmental (embryo's development) decisions in vitro using the stem cells as source material.[1] For this purpose, pluripotent stem cells (PSCs) are cultured in controlled conditions involving specific substrate or extracellular matrices promoting cell adhesion and differentiation, and define culture media compositions.[4] A limited number of signaling factors such as growth factors or small molecules, controlling cell differentiation, is applied sequentially or in a combinatorial manner, at varying dosage and exposure time.[1] Proper differentiation of the cell type of interest is verified by analyzing cell type specific markers, gene expression profile, and functional assays.[1]

Early methods

support cells and matrices provide developmental-like environnemental signals.[8]

Current methodologies

Directed differentiation

This method consists in exposing the cells to specific signaling pathways modulators and manipulating cell culture conditions (environnemental or exogenous) to mimick the natural sequence of developmental decisions to produce a given cell type/tissue.[1][8] A drawback of this approach is the necessity to have a good understanding of how the cell type of interest is formed.[1]

Direct reprogramming

This method, also known as transdifferentiation or direct conversion, consists in overexpressing one or several factors, usually transcription factors, introduced in the cells.[1] The starting material can be either pluripotent stem cells (PSCs), or either differentiated cell type such as fibroblasts. The principle was first demonstrated in 1987 with the myogenic factors MyoD.[9] A drawback of this approach is the introduction of foreign nucleic acid in the cells and the forced expression of transcription factors which effects are not fully understood.

Lineage/cell type-specific selection

This methods consists in selecting the cell type of interest, usually with antibiotic resistance. For this purpose, the source material cells are modified to contain antibiotic resistance cassette under a target cell type specific promoter.[10][11] Only cells committed to the lineage of interest is surviving the selection.

Applications

Directed differentiation provides a potentially unlimited and manipulable source of cell and tissues. Some applications are impaired by the immature phenotype of the pluripotent stem cells (PSCs)-derived cell type, which limits the physiological and functional studies possible.[6] Several application domains emerged:

Model system for basic science

For basic science, notably developmental biology and cell biology, PSC-derived cells allow to study at the molecular and cellular levels fundamental questions in vitro,[5] that would have been otherwise extremely difficult or impossible to study for technical and ethical reasons in vivo such as embryonic development of human. In particular, differentiating cells are amenable for quantitative and qualitative studies.[8] More complex processes can also be studied in vitro and formation of organoids, including cerebroids, optic cup and kidney have been described.

Drug discovery and toxicology

Cell types differentiated from pluripotent stem cells (PSCs) are being evaluated as preclinical in vitro models of Human diseases.[5] Human cell types in a dish provide an alternative to traditional preclinical assays using animal, human immortalized cells or primary cultures from biopsies, which their limitations. Clinically-relevant cell types i.e. cell type affected in diseases are a major focus of research, this includes hepatocytes, Langerhans islet beta-cells,[12] cardiomyocytes and neurons. Drug screen are performed on miniaturized cell culture in multiwell-plates or on a chip.[6]

Disease modeling

PSCs-derived cells from patients are used in vitro to recreate specific pathologies.[6] The specific cell type affected in the pathology is at the base of the model. For example, motoneurons are used to study spinal muscular atrophy (SMA) and cardiomyocytes[2] are used to study arrythmia. This can allow for a better understanding of the pathogenesis and the development of new treatments through drug discovery.[6] Immature PSC-derived cell types can be matured in vitro by various strategies, such as in vitro ageing, to modelize age-related disease in vitro. Major diseases being modelized with PSCs-derived cells are amyotrophic lateral sclerosis (ALS), Alzheimer's (AD), Parkinson's (PD), fragile X syndrome (FXS), Huntington disease (HD), Down syndrome, Spinal muscular atrophy (SMA), muscular dystrophies,[13][14] cystic fibrosis, Long QT syndrome, and Type I diabetes.[6]

Regenerative medicine

The potentially unlimited source of cell and tissues may have direct application for tissue engineering, cell replacement and transplantation following acute injuries and reconstructive surgery.[2][5] These applications are limited to the cell types that can be differentiated efficiently and safely from human PSCs with the proper organogenesis.[1] Decellularized organs are also being used as tissue scaffold for organogenesis. Source material can be normal healthy cells from another donor (heterologous transplantation) or genetically corrected from the same patient (autologous). Concerns on patient safety have been raised due to the possibility of contaminating undifferentiated cells. The first clinical trial using hESC-derived cells was in 2011.[15] The first clinical trial using hiPSC-derived cells started in 2014 in Japan.[16]

References

  1. 1 2 3 4 5 6 7 8 9 10 11 Cohen DE, Melton D (2011). "Turning straw into gold: directing cell fate for regenerative medicine". Nature Reviews Genetics. National Center for Biotechnology Information. 12 (4): 243–252. doi:10.1038/nrg2938. PMID 21386864.
  2. 1 2 3 4 Murry CE, Keller G (2008). "Differentiation of embryonic stem cells to clinically relevant populations: lessons from embryonic development". Cell. 132 (4): 661–680. doi:10.1016/j.cell.2008.02.008. Retrieved 2014-11-06.
  3. ↑ Wichterle H, Lieberam I, Porter JA, Jessell TM (2002). "Directed differentiation of embryonic stem cells into motor neurons". Cell. National Center for Biotechnology Information. 110 (3): 385–397. doi:10.1016/S0092-8674(02)00835-8. PMID 12176325.
  4. 1 2 3 4 5 Spagnoli FM, Hemmati-Brivanlou A (2006). "Guiding embryonic stem cells towards differentiation: lessons from molecular embryology". Current Opinion in Genetics & Development. National Center for Biotechnology Information. 16 (5): 469–475. doi:10.1016/j.gde.2006.08.004. PMID 16919445.
  5. 1 2 3 4 5 6 Keller G. "Embryonic stem cell differentiation: emergence of a new era in biology and medicine". genesdev.cshlp.org. Retrieved 2014-11-06.
  6. 1 2 3 4 5 6 Sterneckert JL, Reinhardt P, Schöler HR (2014). "Investigating human disease using stem cell models". Nature Reviews Genetics. National Center for Biotechnology Information. 15 (9): 625–639. doi:10.1038/nrg3764. PMID 25069490.
  7. ↑ Jones-Villeneuve EM, McBurney MW, Rogers KA, Kalnins VI (1982). "Retinoic acid induces embryonal carcinoma cells to differentiate into neurons and glial cells". The Journal of Cell Biology. The Rockefeller University Press. 94 (2): 253–262. doi:10.1083/jcb.94.2.253. PMC 2112882Freely accessible. PMID 7107698.
  8. 1 2 3 4 Nishikawa S, Jakt LM, Era T (2007). "Embryonic stem-cell culture as a tool for developmental cell biology". Nature Reviews Molecular Cell Biology. National Center for Biotechnology Information. 8 (6): 502–507. doi:10.1038/nrm2189. PMID 17522593.
  9. ↑ Davis RL, Weintraub H, Lassar AB (1987). "Expression of a single transfected cDNA converts fibroblasts to myoblasts.". Cell. National Center for Biotechnology Information. 51 (6): 987–1000. doi:10.1016/0092-8674(87)90585-X. PMID 3690668.
  10. ↑ Marchetti S, Gimond C, Iljin K, Bourcier C, Alitalo K, Pouysségur J, Pagès G (2002). "Endothelial cells genetically selected from differentiating mouse embryonic stem cells incorporate at sites of neovascularization in vivo". Journal of Cell Science. National Center for Biotechnology Information. 115 (Pt 10): 2075–2085. PMID 11973349.
  11. ↑ Klug MG, Soonpaa MH, Koh GY, Field LJ (1996). "Genetically selected cardiomyocytes from differentiating embronic stem cells form stable intracardiac grafts". Journal of Clinical Investigation. National Center for Biotechnology Information. 98 (1): 216–224. doi:10.1172/JCI118769. PMC 507419Freely accessible. PMID 8690796.
  12. ↑ Lumelsky N, Blondel O, Laeng P, Velasco I, Ravin R, McKay R (2001). "Differentiation of embryonic stem cells to insulin-secreting structures similar to pancreatic islets". Science. National Center for Biotechnology Information. 292 (5520): 1389–1394. doi:10.1126/science.1058866. PMID 11326082.
  13. ↑ Chal J, Oginuma M, Al Tanoury Z, Gobert B, Sumara O, Hick A, Bousson F, Zidouni Y, Mursch C, Moncuquet P, Tassy O, Vincent S, Miyanari A, Bera A, Garnier JM, Guevara G, Hestin M, Kennedy L, Hayashi S, Drayton B, Cherrier T, Gayraud-Morel B, Gussoni E, Relaix F, Tajbakhsh S, Pourquié O (August 2015). "Differentiation of pluripotent stem cells to muscle fiber to model Duchenne muscular dystrophy". Nature Biotechnology. 33: 962–9. doi:10.1038/nbt.3297. PMID 26237517.
  14. ↑ Shelton M, Kocharyan A, Liu J, Skerjanc IS, Stanford WL (2016). "Robust generation and expansion of skeletal muscle progenitors and myocytes from human pluripotent stem cells". Methods. 101: 73–84. doi:10.1016/j.ymeth.2015.09.019. PMID 26404920.
  15. ↑ "First test of human embryonic stem cell therapy in people discontinued - The Washington Post". washingtonpost.com. Retrieved 2014-11-06.
  16. ↑ "Japanese team first to use iPS cells in bid to restore human sight | The Japan Times". japantimes.co.jp. Retrieved 2014-11-06.
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